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  5. AMTR_s00010p00239530

AMTR_s00010p00239530 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.298

Description : RNA biosynthesis.transcriptional activation.NF-Y transcription factor complex.NF-YB component


Gene families : OG0000142 (Archaeplastida) Phylogenetic Tree(s): OG0000142_tree ,
OG_05_0000244 (LandPlants) Phylogenetic Tree(s): OG_05_0000244_tree ,
OG_06_0000165 (SeedPlants) Phylogenetic Tree(s): OG_06_0000165_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00239530
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00202310 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.NF-Y... 0.03 Archaeplastida
AT2G13570 NF-YB7 nuclear factor Y, subunit B7 0.04 Archaeplastida
AT5G47670 NF-YB6, L1L nuclear factor Y, subunit B6 0.02 Archaeplastida
GSVIVT01010264001 No alias RNA biosynthesis.transcriptional activation.NF-Y... 0.02 Archaeplastida
Gb_30988 No alias component beta of TATA box-binding protein NC2 regulator complex 0.03 Archaeplastida
LOC_Os07g41580.1 No alias component NF-YB of NF-Y transcription factor complex 0.03 Archaeplastida
MA_922668g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Smo442185 No alias RNA biosynthesis.transcriptional activation.NF-Y... 0.02 Archaeplastida
Solyc01g067130.4.1 No alias component NF-YB of NF-Y transcription factor complex 0.03 Archaeplastida
Solyc10g009440.4.1 No alias component NF-YB of NF-Y transcription factor complex 0.02 Archaeplastida
Solyc12g006120.3.1 No alias component NF-YB of NF-Y transcription factor complex 0.03 Archaeplastida
Zm00001e021676_P001 No alias component NF-YB of NF-Y transcription factor complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
MF GO:0004806 triglyceride lipase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006541 glutamine metabolic process IEP Neighborhood
BP GO:0006542 glutamine biosynthetic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0060089 molecular transducer activity IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 23 87
No external refs found!