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  5. LOC_Os10g31970.1

LOC_Os10g31970.1


Description : chromatin remodeling factor (ATRX)


Gene families : OG0003543 (Archaeplastida) Phylogenetic Tree(s): OG0003543_tree ,
OG_05_0003927 (LandPlants) Phylogenetic Tree(s): OG_05_0003927_tree ,
OG_06_0004978 (SeedPlants) Phylogenetic Tree(s): OG_06_0004978_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g31970.1
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT1G08600 CHR20, ATRX P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Cpa|evm.model.tig00021760.3 No alias Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01023393001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Gb_33142 No alias chromatin remodeling factor (ATRX) 0.05 Archaeplastida
MA_40985g0010 No alias Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp5g21000.1 No alias chromatin remodeling factor (ATRX) 0.03 Archaeplastida
Pp3c14_22150V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Smo441095 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Solyc04g050150.4.1 No alias chromatin remodeling factor (ATRX) 0.04 Archaeplastida
Solyc04g050160.4.1 No alias Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 1119 1243
IPR000330 SNF2_N 731 1037
No external refs found!