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  5. AMTR_s00010p00242360

AMTR_s00010p00242360 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.313

Description : Enzyme classification.EC_1 oxidoreductases.EC_1.10 oxidoreductase acting on diphenol or related substance as donor


Gene families : OG0000114 (Archaeplastida) Phylogenetic Tree(s): OG0000114_tree ,
OG_05_0000045 (LandPlants) Phylogenetic Tree(s): OG_05_0000045_tree ,
OG_06_0000147 (SeedPlants) Phylogenetic Tree(s): OG_06_0000147_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00242360
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00185120 evm_27.TU.AmTr_v1... Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.04 Archaeplastida
AT2G30210 LAC3 laccase 3 0.02 Archaeplastida
GSVIVT01008406001 No alias Laccase-1 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01012343001 No alias Laccase-14 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01034139001 No alias Cell wall.lignin.monolignol conjugation and... 0.03 Archaeplastida
GSVIVT01034783001 No alias Laccase-15 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_23947 No alias Laccase-1 OS=Arabidopsis thaliana (sp|q9lms3|lac1_arath... 0.02 Archaeplastida
LOC_Os01g61160.1 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os01g62480.1 No alias lignin laccase 0.02 Archaeplastida
LOC_Os02g51440.1 No alias Putative laccase-9 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os03g18640.1 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.03 Archaeplastida
LOC_Os05g38390.1 No alias Putative laccase-11 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os11g01730.1 No alias Putative laccase-17 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os11g47390.1 No alias Laccase-21 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os12g01730.1 No alias Laccase-23 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_10435226g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_136989g0010 No alias Laccase-6 OS=Arabidopsis thaliana (sp|q9zpy2|lac6_arath... 0.05 Archaeplastida
MA_170004g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_186173g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_1991g0010 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_21316g0010 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.03 Archaeplastida
MA_33288g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_414479g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_63042g0010 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_812936g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Smo78002 No alias Laccase-4 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Smo95740 No alias Laccase-13 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Solyc04g072280.3.1 No alias Laccase-14 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc05g043360.3.1 No alias Laccase-7 OS=Arabidopsis thaliana (sp|q9sr40|lac7_arath... 0.05 Archaeplastida
Solyc05g052390.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc12g056820.2.1 No alias Laccase-15 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e015854_P001 No alias Putative laccase-9 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e019412_P001 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e023886_P001 No alias Putative laccase-9 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e028830_P002 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e031826_P001 No alias lignin laccase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011706 Cu-oxidase_2 414 502
IPR001117 Cu-oxidase 139 288
IPR011707 Cu-oxidase_3 13 125
No external refs found!