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  5. LOC_Os10g33780.1

LOC_Os10g33780.1


Description : Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana (sp|o82268|lsh3_arath : 196.0)


Gene families : OG0000579 (Archaeplastida) Phylogenetic Tree(s): OG0000579_tree ,
OG_05_0000324 (LandPlants) Phylogenetic Tree(s): OG_05_0000324_tree ,
OG_06_0000239 (SeedPlants) Phylogenetic Tree(s): OG_06_0000239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g33780.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00153p00047660 evm_27.TU.AmTr_v1... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.04 Archaeplastida
AMTR_s00155p00022580 evm_27.TU.AmTr_v1... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 Archaeplastida
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.02 Archaeplastida
LOC_Os02g07030.1 No alias Protein G1-like1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os06g46030.1 No alias Protein G1-like2 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
Solyc07g150147.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.03 Archaeplastida
Solyc10g007310.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.02 Archaeplastida
Zm00001e013711_P001 No alias Protein G1-like2 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
Zm00001e032784_P001 No alias Protein G1 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
InterPro domains Description Start Stop
IPR006936 ALOG_dom 36 153
No external refs found!