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  5. LOC_Os10g35440.1

LOC_Os10g35440.1


Description : Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica (sp|q76c99|rf1_orysi : 465.0)


Gene families : OG0001482 (Archaeplastida) Phylogenetic Tree(s): OG0001482_tree ,
OG_05_0000870 (LandPlants) Phylogenetic Tree(s): OG_05_0000870_tree ,
OG_06_0000537 (SeedPlants) Phylogenetic Tree(s): OG_06_0000537_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g35440.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
LOC_Os08g01650.1 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
Zm00001e011263_P001 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
Zm00001e011267_P001 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
Zm00001e026658_P003 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
Zm00001e026660_P001 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 194 243
IPR002885 Pentatricopeptide_repeat 83 104
IPR002885 Pentatricopeptide_repeat 153 184
No external refs found!