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  5. LOC_Os10g39936.1

LOC_Os10g39936.1


Description : no hits & (original description: none)


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0020717 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g39936.1
Cluster HCCA: Cluster_208

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00271850 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00008p00200880 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00025p00229930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00056p00122930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00102p00069840 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AT1G22500 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT1G76410 ATL8 RING/U-box superfamily protein 0.05 Archaeplastida
AT2G42360 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G11110 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G61550 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G62690 ATL5 AtL5 0.02 Archaeplastida
AT4G11370 RHA1A RING-H2 finger A1A 0.02 Archaeplastida
AT4G35480 RHA3B RING-H2 finger A3B 0.03 Archaeplastida
AT5G66070 No alias RING/U-box superfamily protein 0.04 Archaeplastida
GSVIVT01009098001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012018001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012020001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01016564001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_05381 No alias RHA2 signal transducer of abscisic acid perception 0.02 Archaeplastida
Gb_40644 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os01g11500.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os04g49550.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os05g39260.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os06g34620.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os08g38460.1 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
MA_101154g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10429091g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_227897g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_25345g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_308999g0010 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_308999g0020 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_377006g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_51630g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_754688g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_83882g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp2g11860.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Mp5g08270.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Pp3c17_13190V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c1_32230V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c5_4170V3.1 No alias RING/U-box superfamily protein 0.01 Archaeplastida
Smo412609 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Smo423895 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Smo96681 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc01g091770.4.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Solyc01g095810.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc01g109200.4.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc03g032060.1.1 No alias RING-H2 finger protein ATL80 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc03g083460.3.1 No alias RING-H2 finger protein ATL22 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc03g123680.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc08g082680.3.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc09g075320.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc10g009487.1.1 No alias RING-H2 finger protein ATL20 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc11g066510.3.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e002272_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003264_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e003426_P001 No alias ubiquitin protein ligase (XERICO) 0.04 Archaeplastida
Zm00001e007129_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e010029_P001 No alias ubiquitin protein ligase (XERICO) 0.02 Archaeplastida
Zm00001e010363_P001 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e010787_P001 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e011306_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e013809_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e014302_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e014764_P001 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e015905_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e016470_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e016474_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e025397_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e026193_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e032186_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e034025_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e035560_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e036691_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006536 glutamate metabolic process IEP Neighborhood
BP GO:0006537 glutamate biosynthetic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
BP GO:0015689 molybdate ion transport IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
MF GO:0015930 glutamate synthase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 118 161
No external refs found!