1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os10g40710.1

LOC_Os10g40710.1


Description : Expansin-B2 OS=Oryza sativa subsp. japonica (sp|o24230|expb2_orysj : 545.0)


Gene families : OG0000383 (Archaeplastida) Phylogenetic Tree(s): OG0000383_tree ,
OG_05_0012219 (LandPlants) Phylogenetic Tree(s): OG_05_0012219_tree ,
OG_06_0012328 (SeedPlants) Phylogenetic Tree(s): OG_06_0012328_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g40710.1
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00059150 evm_27.TU.AmTr_v1... Putative expansin-B2 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT1G65680 ATHEXP BETA 1.4,... expansin B2 0.03 Archaeplastida
AT2G20750 EXPB1, ATEXPB1,... expansin B1 0.04 Archaeplastida
LOC_Os03g01260.1 No alias Expansin-B8 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_9323664g0010 No alias Expansin-B3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c1_37980V3.1 No alias expansin B3 0.02 Archaeplastida
Zm00001e000036_P001 No alias Expansin-B4 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Zm00001e002335_P001 No alias Expansin-B3 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e002337_P001 No alias Expansin-B3 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e015337_P001 No alias Expansin-B11 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Zm00001e033407_P001 No alias Expansin-B11 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e036860_P001 No alias Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e037879_P001 No alias Expansin-B3 OS=Oryza sativa subsp. japonica... 0.08 Archaeplastida
Zm00001e037881_P001 No alias Expansin-B2 OS=Oryza sativa subsp. japonica... 0.07 Archaeplastida
Zm00001e037884_P001 No alias Expansin-B6 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e037885_P001 No alias Expansin-B6 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Zm00001e041519_P002 No alias Expansin-B5 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006486 protein glycosylation IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 68 147
IPR007117 Expansin_CBD 159 245
No external refs found!