LOC_Os10g40810.1

Description : transcription factor (GATA)

Gene families : OG0000094 (Archaeplastida) Phylogenetic Tree(s): OG0000094_tree ,
OG_05_0000055 (LandPlants) Phylogenetic Tree(s): OG_05_0000055_tree ,
OG_06_0000244 (SeedPlants) Phylogenetic Tree(s): OG_06_0000244_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os10g40810.1
Cluster	HCCA: Cluster_311

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00039p00112210	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT1G08000	GATA10	GATA transcription factor 10	0.03	Archaeplastida
AT3G20750	GATA29	GATA transcription factor 29	0.02	Archaeplastida
AT4G26150	GATA22, CGA1, GNL	cytokinin-responsive gata factor 1	0.02	Archaeplastida
AT4G34680	GATA3	GATA transcription factor 3	0.03	Archaeplastida
AT5G26930	GATA23	GATA transcription factor 23	0.03	Archaeplastida
GSVIVT01015204001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01018833001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
GSVIVT01018951001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01033385001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.06	Archaeplastida
GSVIVT01035048001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01035614001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
Gb_06864	No alias	transcription factor (GATA)	0.03	Archaeplastida
LOC_Os01g74540.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
LOC_Os02g43150.1	No alias	transcription factor (GATA)	0.07	Archaeplastida
LOC_Os02g56250.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
LOC_Os05g44400.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
MA_10434815g0010	No alias	transcription factor (GATA)	0.04	Archaeplastida
MA_10436047g0010	No alias	transcription factor (GATA)	0.06	Archaeplastida
MA_120821g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_44185g0010	No alias	transcription factor (GATA)	0.03	Archaeplastida
MA_92522g0010	No alias	transcription factor (GATA)	0.02	Archaeplastida
Pp3c10_22600V3.1	No alias	GATA transcription factor 5	0.02	Archaeplastida
Solyc02g084590.4.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
Solyc02g085190.2.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
Solyc03g033660.4.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
Solyc04g015360.3.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Solyc05g056120.3.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
Solyc08g066510.3.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Solyc10g018560.2.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e002326_P001	No alias	transcription factor (GATA)	0.06	Archaeplastida
Zm00001e005940_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e006272_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e015260_P001	No alias	transcription factor (GATA)	0.06	Archaeplastida
Zm00001e016165_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e018438_P001	No alias	transcription factor (GATA)	0.06	Archaeplastida
Zm00001e020243_P001	No alias	transcription factor (GATA)	0.07	Archaeplastida
Zm00001e023650_P003	No alias	transcription factor (GATA)	0.05	Archaeplastida
Zm00001e026601_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e029060_P002	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e032219_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e032513_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e037876_P002	No alias	transcription factor (GATA)	0.04	Archaeplastida
Zm00001e038971_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e039468_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e039469_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000930	gamma-tubulin complex	IEP	Neighborhood
CC	GO:0000931	gamma-tubulin large complex	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0008274	gamma-tubulin ring complex	IEP	Neighborhood
BP	GO:0031503	protein-containing complex localization	IEP	Neighborhood
BP	GO:0033566	gamma-tubulin complex localization	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0034629	cellular protein-containing complex localization	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
CC	GO:0044450	microtubule organizing center part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	278	313

External Links

No external refs found!

LOC_Os10g40810.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation