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  5. LOC_Os10g41100.1

LOC_Os10g41100.1


Description : Transcription factor GHD7 OS=Oryza sativa subsp. japonica (sp|e5rqa1|ghd7_orysj : 92.0)


Gene families : OG0000859 (Archaeplastida) Phylogenetic Tree(s): OG0000859_tree ,
OG_05_0013065 (LandPlants) Phylogenetic Tree(s): OG_05_0013065_tree ,
OG_06_0013121 (SeedPlants) Phylogenetic Tree(s): OG_06_0013121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g41100.1
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00262710 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
AMTR_s00111p00022140 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT3G02380 COL2, ATCOL2 CONSTANS-like 2 0.05 Archaeplastida
AT5G15850 COL1, ATCOL1 CONSTANS-like 1 0.07 Archaeplastida
AT5G24930 ATCOL4, COL4 CONSTANS-like 4 0.04 Archaeplastida
AT5G57660 ATCOL5, COL5 CONSTANS-like 5 0.03 Archaeplastida
Cre12.g534100 No alias No description available 0.01 Archaeplastida
GSVIVT01029107001 No alias Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01036499001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.06 Archaeplastida
MA_7292g0010 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Smo185898 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
Solyc02g089520.2.1 No alias transcription factor (BBX-CO) 0.02 Archaeplastida
Solyc02g089540.3.1 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Solyc07g006630.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e002319_P001 No alias Transcription factor GHD7 OS=Oryza sativa subsp.... 0.1 Archaeplastida
Zm00001e007691_P001 No alias transcription factor (BBX-CO) 0.13 Archaeplastida
Zm00001e013804_P001 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e037706_P002 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e037873_P001 No alias no hits & (original description: none) 0.15 Archaeplastida
Zm00001e041152_P001 No alias transcription factor (BBX-CO) 0.14 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
MF GO:0004096 catalase activity IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006534 cysteine metabolic process IEP Neighborhood
BP GO:0006535 cysteine biosynthetic process from serine IEP Neighborhood
BP GO:0006563 L-serine metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
MF GO:0009001 serine O-acetyltransferase activity IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009070 serine family amino acid biosynthetic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016412 serine O-acyltransferase activity IEP Neighborhood
MF GO:0016413 O-acetyltransferase activity IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
BP GO:0019344 cysteine biosynthetic process IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR010402 CCT_domain 222 263
No external refs found!