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  5. LOC_Os10g41790.1

LOC_Os10g41790.1


Description : nMAT1/2 type-I mitochondrial RNA splicing factor


Gene families : OG0004888 (Archaeplastida) Phylogenetic Tree(s): OG0004888_tree ,
OG_05_0003570 (LandPlants) Phylogenetic Tree(s): OG_05_0003570_tree ,
OG_06_0003926 (SeedPlants) Phylogenetic Tree(s): OG_06_0003926_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g41790.1
Cluster HCCA: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00133480 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00047p00213160 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00096p00172010 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT1G30010 No alias Intron maturase, type II family protein 0.02 Archaeplastida
GSVIVT01023127001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
Gb_04055 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.04 Archaeplastida
LOC_Os12g21870.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 Archaeplastida
MA_52319g0030 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 Archaeplastida
Solyc01g112025.1.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.05 Archaeplastida
Zm00001e000458_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.1 Archaeplastida
Zm00001e000640_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR024937 Domain_X 490 584
No external refs found!