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  5. LOC_Os10g42760.1

LOC_Os10g42760.1


Description : Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana (sp|q3eda9|ppr46_arath : 280.0)


Gene families : OG0011510 (Archaeplastida) Phylogenetic Tree(s): OG0011510_tree ,
OG_05_0011402 (LandPlants) Phylogenetic Tree(s): OG_05_0011402_tree ,
OG_06_0011461 (SeedPlants) Phylogenetic Tree(s): OG_06_0011461_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g42760.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00119810 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AT1G16830 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01029542001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e002488_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 486 534
IPR002885 Pentatricopeptide_repeat 381 429
IPR002885 Pentatricopeptide_repeat 245 290
No external refs found!