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  5. AMTR_s00010p00256680

AMTR_s00010p00256680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.395

Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana


Gene families : OG0000543 (Archaeplastida) Phylogenetic Tree(s): OG0000543_tree ,
OG_05_0000407 (LandPlants) Phylogenetic Tree(s): OG_05_0000407_tree ,
OG_06_0000284 (SeedPlants) Phylogenetic Tree(s): OG_06_0000284_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00256680
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
AT5G42140 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Archaeplastida
LOC_Os01g72320.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
LOC_Os05g01610.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
LOC_Os05g31920.2 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
MA_10435870g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_136157g0010 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
Smo112120 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 Archaeplastida
Zm00001e029685_P002 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
InterPro domains Description Start Stop
IPR000306 Znf_FYVE 657 723
IPR013591 Brevis_radix_dom 1002 1055
IPR000408 Reg_chr_condens 382 433
IPR000408 Reg_chr_condens 606 653
IPR000408 Reg_chr_condens 330 378
IPR000408 Reg_chr_condens 437 485
IPR000408 Reg_chr_condens 552 601
IPR000408 Reg_chr_condens 500 549
No external refs found!