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  5. LOC_Os11g04295.1

LOC_Os11g04295.1


Description : Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana (sp|q9ssr4|ppr77_arath : 584.0)


Gene families : OG0010975 (Archaeplastida) Phylogenetic Tree(s): OG0010975_tree ,
OG_05_0010924 (LandPlants) Phylogenetic Tree(s): OG_05_0010924_tree ,
OG_06_0010866 (SeedPlants) Phylogenetic Tree(s): OG_06_0010866_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g04295.1
Cluster HCCA: Cluster_319

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00216810 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00104p00122950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52620... 0.05 Archaeplastida
AT1G52620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
GSVIVT01017297001 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.05 Archaeplastida
Gb_26665 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.04 Archaeplastida
MA_957303g0010 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.03 Archaeplastida
Solyc03g116560.1.1 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.03 Archaeplastida
Zm00001e024077_P001 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 173 199
IPR002885 Pentatricopeptide_repeat 378 425
IPR002885 Pentatricopeptide_repeat 448 496
IPR002885 Pentatricopeptide_repeat 711 757
IPR002885 Pentatricopeptide_repeat 623 670
IPR002885 Pentatricopeptide_repeat 238 286
IPR002885 Pentatricopeptide_repeat 553 602
IPR002885 Pentatricopeptide_repeat 308 357
IPR002885 Pentatricopeptide_repeat 514 546
No external refs found!