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  5. AMTR_s00010p00260490

AMTR_s00010p00260490 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.442

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL34 component


Gene families : OG0001700 (Archaeplastida) Phylogenetic Tree(s): OG0001700_tree ,
OG_05_0001610 (LandPlants) Phylogenetic Tree(s): OG_05_0001610_tree ,
OG_06_0002125 (SeedPlants) Phylogenetic Tree(s): OG_06_0002125_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00260490
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT1G26880 No alias Ribosomal protein L34e superfamily protein 0.13 Archaeplastida
AT1G69620 RPL34 ribosomal protein L34 0.12 Archaeplastida
AT3G28900 No alias Ribosomal protein L34e superfamily protein 0.13 Archaeplastida
Cpa|evm.model.tig00000632.3 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Cre16.g661050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 Archaeplastida
GSVIVT01011419001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
GSVIVT01019985001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
Gb_36060 No alias component RPL34 of LSU proteome component 0.03 Archaeplastida
LOC_Os08g06040.1 No alias component RPL34 of LSU proteome component 0.16 Archaeplastida
LOC_Os08g33920.1 No alias component RPL34 of LSU proteome component 0.04 Archaeplastida
LOC_Os09g24690.1 No alias component RPL34 of LSU proteome component 0.14 Archaeplastida
MA_109553g0010 No alias component RPL34 of LSU proteome component 0.09 Archaeplastida
MA_175574g0010 No alias component RPL34 of LSU proteome component 0.09 Archaeplastida
MA_7581523g0010 No alias component RPL34 of LSU proteome component 0.07 Archaeplastida
Mp4g17040.1 No alias component RPL34 of LSU proteome component 0.21 Archaeplastida
Pp3c11_2940V3.1 No alias Ribosomal protein L34e superfamily protein 0.13 Archaeplastida
Pp3c11_3090V3.1 No alias Ribosomal protein L34e superfamily protein 0.05 Archaeplastida
Pp3c1_1800V3.1 No alias Ribosomal protein L34e superfamily protein 0.1 Archaeplastida
Pp3c25_11980V3.1 No alias Ribosomal protein L34e superfamily protein 0.13 Archaeplastida
Pp3c2_34570V3.1 No alias Ribosomal protein L34e superfamily protein 0.07 Archaeplastida
Pp3c7_21380V3.1 No alias Ribosomal protein L34e superfamily protein 0.1 Archaeplastida
Smo113433 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Solyc02g087930.3.1 No alias component RPL34 of LSU proteome component 0.04 Archaeplastida
Solyc05g007560.3.1 No alias component RPL34 of LSU proteome component 0.17 Archaeplastida
Solyc06g069860.4.1 No alias component RPL34 of LSU proteome component 0.23 Archaeplastida
Zm00001e004116_P001 No alias component RPL34 of LSU proteome component 0.14 Archaeplastida
Zm00001e021733_P002 No alias component RPL34 of LSU proteome component 0.13 Archaeplastida
Zm00001e034114_P001 No alias component RPL34 of LSU proteome component 0.12 Archaeplastida
Zm00001e040229_P001 No alias component RPL34 of LSU proteome component 0.16 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
CC GO:0005853 eukaryotic translation elongation factor 1 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR008195 Ribosomal_L34Ae 1 96
No external refs found!