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  5. LOC_Os11g07500.1

LOC_Os11g07500.1


Description : RNA helicase component MTR4/HEN2 of Nuclear Exosome Targeting (NEXT) activation complex


Gene families : OG0000933 (Archaeplastida) Phylogenetic Tree(s): OG0000933_tree ,
OG_05_0002223 (LandPlants) Phylogenetic Tree(s): OG_05_0002223_tree ,
OG_06_0002622 (SeedPlants) Phylogenetic Tree(s): OG_06_0002622_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g07500.1
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00200390 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.03 Archaeplastida
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.04 Archaeplastida
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.13 Archaeplastida
Cpa|evm.model.tig00020723.108 No alias RNA processing.RNA decay.exosome complex.associated... 0.06 Archaeplastida
Cre02.g117900 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 Archaeplastida
Cre06.g289950 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
GSVIVT01032255001 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 Archaeplastida
GSVIVT01037437001 No alias RNA processing.RNA decay.exosome complex.associated... 0.06 Archaeplastida
Gb_23155 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.04 Archaeplastida
MA_10426385g0010 No alias DExH-box ATP-dependent RNA helicase DExH10... 0.04 Archaeplastida
MA_10437134g0010 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.02 Archaeplastida
Mp4g03900.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.04 Archaeplastida
Mp6g05580.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.09 Archaeplastida
Pp3c10_7310V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.05 Archaeplastida
Pp3c14_23340V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.17 Archaeplastida
Smo403447 No alias RNA processing.RNA decay.exosome complex.associated... 0.05 Archaeplastida
Solyc01g103080.3.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.09 Archaeplastida
Solyc05g047520.4.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 Archaeplastida
Solyc06g005990.4.1 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.02 Archaeplastida
Solyc12g017860.3.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 Archaeplastida
Zm00001e013693_P002 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.05 Archaeplastida
Zm00001e036710_P004 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.13 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004176 ATP-dependent peptidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006474 N-terminal protein amino acid acetylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018206 peptidyl-methionine modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
BP GO:0031365 N-terminal protein amino acid modification IEP Neighborhood
CC GO:0031414 N-terminal protein acetyltransferase complex IEP Neighborhood
CC GO:0031417 NatC complex IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 86 232
IPR025696 rRNA_proc-arch_dom 537 800
IPR012961 Ski2_C 828 998
IPR001650 Helicase_C 394 481
No external refs found!