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  5. AMTR_s00010p00261620

AMTR_s00010p00261620 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.455

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.zf-HD transcription factor


Gene families : OG0000209 (Archaeplastida) Phylogenetic Tree(s): OG0000209_tree ,
OG_05_0000122 (LandPlants) Phylogenetic Tree(s): OG_05_0000122_tree ,
OG_06_0000088 (SeedPlants) Phylogenetic Tree(s): OG_06_0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00261620
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00085480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00070p00154800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00119p00074870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
AT1G14440 AtHB31, ZHD4, HB31 homeobox protein 31 0.03 Archaeplastida
AT1G69600 ATHB29, ZFHD1, ZHD11 zinc finger homeodomain 1 0.02 Archaeplastida
AT1G75240 AtHB33, ZHD5, HB33 homeobox protein 33 0.02 Archaeplastida
AT2G02540 ZHD3, HB21, ATHB21, ZFHD4 homeobox protein 21 0.02 Archaeplastida
AT3G28917 MIF2 mini zinc finger 2 0.04 Archaeplastida
AT5G39760 ZHD10, AtHB23, HB23 homeobox protein 23 0.02 Archaeplastida
GSVIVT01000250001 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
GSVIVT01011413001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01011415001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01012772001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Gb_15163 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Gb_18045 No alias transcription factor (zf-HD) 0.02 Archaeplastida
LOC_Os08g37400.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
LOC_Os11g13930.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
MA_101972g0010 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_12314g0010 No alias transcription factor (zf-HD) 0.03 Archaeplastida
MA_171206g0010 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_173815g0010 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_38970g0010 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_91212g0010 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Pp3c19_20410V3.1 No alias homeobox protein 21 0.02 Archaeplastida
Pp3c21_11010V3.1 No alias homeobox protein 22 0.04 Archaeplastida
Pp3c2_21160V3.1 No alias homeobox protein 33 0.02 Archaeplastida
Pp3c7_15000V3.1 No alias homeobox protein 33 0.03 Archaeplastida
Solyc01g102980.3.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Solyc02g087970.1.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Solyc03g116070.1.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Solyc04g074990.3.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Solyc05g007580.1.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Zm00001e008082_P001 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Zm00001e015590_P001 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Zm00001e021292_P003 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Zm00001e022486_P001 No alias transcription factor (zf-HD) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003883 CTP synthase activity IEP Neighborhood
MF GO:0004594 pantothenate kinase activity IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009165 nucleotide biosynthetic process IEP Neighborhood
BP GO:0009690 cytokinin metabolic process IEP Neighborhood
BP GO:0010817 regulation of hormone levels IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
BP GO:0015936 coenzyme A metabolic process IEP Neighborhood
BP GO:0015937 coenzyme A biosynthetic process IEP Neighborhood
MF GO:0019139 cytokinin dehydrogenase activity IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0034754 cellular hormone metabolic process IEP Neighborhood
BP GO:0042445 hormone metabolic process IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0090407 organophosphate biosynthetic process IEP Neighborhood
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 26 80
No external refs found!