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  5. LOC_Os11g10070.1

LOC_Os11g10070.1


Description : Transcriptional corepressor SEUSS OS=Arabidopsis thaliana (sp|q8w234|seuss_arath : 240.0)


Gene families : OG0001132 (Archaeplastida) Phylogenetic Tree(s): OG0001132_tree ,
OG_05_0001403 (LandPlants) Phylogenetic Tree(s): OG_05_0001403_tree ,
OG_06_0001294 (SeedPlants) Phylogenetic Tree(s): OG_06_0001294_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g10070.1
Cluster HCCA: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00119460 evm_27.TU.AmTr_v1... Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT1G43850 SEU SEUSS transcriptional co-regulator 0.06 Archaeplastida
GSVIVT01010616001 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_04218 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.04 Archaeplastida
Gb_04695 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.08 Archaeplastida
Gb_27183 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.02 Archaeplastida
MA_12796g0010 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.1 Archaeplastida
MA_13825g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_208023g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_33392g0010 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.05 Archaeplastida
Mp8g17020.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.02 Archaeplastida
Pp3c16_1979V3.1 No alias No annotation 0.03 Archaeplastida
Pp3c16_1990V3.1 No alias SEUSS transcriptional co-regulator 0.04 Archaeplastida
Pp3c25_7810V3.1 No alias SEUSS transcriptional co-regulator 0.03 Archaeplastida
Pp3c25_7930V3.1 No alias SEUSS transcriptional co-regulator 0.03 Archaeplastida
Pp3c6_27010V3.1 No alias SEUSS transcriptional co-regulator 0.03 Archaeplastida
Solyc03g026190.3.1 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.1 Archaeplastida
Solyc06g059750.3.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.1 Archaeplastida
Solyc06g059760.3.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.08 Archaeplastida
Zm00001e021381_P001 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e029868_P001 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e039584_P001 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009581 detection of external stimulus IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009583 detection of light stimulus IEP Neighborhood
BP GO:0009584 detection of visible light IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0018298 protein-chromophore linkage IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0051606 detection of stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR029005 LIM-bd/SEUSS 403 603
IPR029005 LIM-bd/SEUSS 352 388
No external refs found!