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  5. LOC_Os11g10740.1

LOC_Os11g10740.1


Description : Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana (sp|q9lnu6|ppr53_arath : 314.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0014217 (LandPlants) Phylogenetic Tree(s): OG_05_0014217_tree ,
OG_06_0014142 (SeedPlants) Phylogenetic Tree(s): OG_06_0014142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g10740.1
Cluster HCCA: Cluster_350

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00257020 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.02 Archaeplastida
AMTR_s00011p00195950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22150,... 0.02 Archaeplastida
AMTR_s00024p00225420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
AMTR_s00051p00085060 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g16610... 0.02 Archaeplastida
AMTR_s00057p00151990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
AMTR_s00130p00019530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G29230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G18840 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.06 Archaeplastida
AT5G48910 LPA66 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01003804001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
GSVIVT01008721001 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.09 Archaeplastida
GSVIVT01009227001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
GSVIVT01011333001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Archaeplastida
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01031849001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
GSVIVT01036207001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 Archaeplastida
GSVIVT01036975001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.06 Archaeplastida
GSVIVT01037258001 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.04 Archaeplastida
Gb_00194 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 Archaeplastida
Gb_00862 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_03136 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_03137 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_04430 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_04460 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_04533 No alias RNA editing factor (OTP82) 0.02 Archaeplastida
Gb_05123 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
Gb_05649 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_06693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_08128 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_09146 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_09407 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Gb_09704 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_09793 No alias RNA editing factor (MEF7) 0.05 Archaeplastida
Gb_10151 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_10152 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_11025 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_11219 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_11220 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_11545 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_12556 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
Gb_12585 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_13221 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_14956 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_15588 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_16032 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
Gb_16328 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_16955 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_17076 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_17916 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_18149 No alias OTP70 plastidial RNA splicing factor 0.04 Archaeplastida
Gb_18745 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_20749 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_20774 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_21055 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_21351 No alias RNA editing factor (CRR21) 0.04 Archaeplastida
Gb_21435 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_21745 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_21965 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_22288 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_22805 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_23018 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_25604 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_26571 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_26695 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_27057 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_27468 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_28037 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_29873 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_30523 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_30661 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_31374 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_31474 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_31699 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
Gb_32227 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_33294 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Gb_33328 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_33537 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.09 Archaeplastida
Gb_33575 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Gb_33697 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_33726 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_33959 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_34248 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_34298 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_35645 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_36081 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_36172 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Gb_37572 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_37820 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_39249 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_41325 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_41341 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
LOC_Os04g57940.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.14 Archaeplastida
LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.04 Archaeplastida
LOC_Os07g25500.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
MA_27726g0010 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_43615g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_81514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.08 Archaeplastida
MA_8893194g0010 No alias RNA editing factor (MEF1) 0.1 Archaeplastida
Pp3c19_930V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
Smo109721 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
Smo82255 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.06 Archaeplastida
Smo95815 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.02 Archaeplastida
Solyc01g095160.3.1 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.04 Archaeplastida
Solyc01g098150.3.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
Solyc02g014360.3.1 No alias RNA editing factor (MEF11) 0.02 Archaeplastida
Solyc02g068630.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc02g081900.4.1 No alias RNA editing factor (OTP84) 0.03 Archaeplastida
Solyc02g087610.1.1 No alias Pentatricopeptide repeat-containing protein At3g28660... 0.03 Archaeplastida
Solyc03g119950.1.1 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
Solyc04g009210.1.1 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.02 Archaeplastida
Solyc05g006800.2.1 No alias Pentatricopeptide repeat-containing protein At1g59720,... 0.02 Archaeplastida
Solyc05g023900.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc09g009950.4.1 No alias RNA editing factor (MEF10) 0.02 Archaeplastida
Solyc10g054730.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc10g080220.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
Zm00001e002234_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e002505_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e003562_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.07 Archaeplastida
Zm00001e003605_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Zm00001e005246_P001 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.06 Archaeplastida
Zm00001e007042_P001 No alias RNA editing factor (AEF1) 0.05 Archaeplastida
Zm00001e011417_P001 No alias RNA editing factor (CRR28) 0.04 Archaeplastida
Zm00001e011467_P004 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.07 Archaeplastida
Zm00001e011519_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Zm00001e013116_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Archaeplastida
Zm00001e014800_P001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.03 Archaeplastida
Zm00001e018346_P001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.08 Archaeplastida
Zm00001e020567_P001 No alias RNA editing factor (MEF7) 0.02 Archaeplastida
Zm00001e021457_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Zm00001e023498_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e030553_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.12 Archaeplastida
Zm00001e034903_P001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.02 Archaeplastida
Zm00001e035419_P001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.05 Archaeplastida
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.05 Archaeplastida
Zm00001e036301_P001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 Archaeplastida
Zm00001e036647_P001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 272 319
IPR002885 Pentatricopeptide_repeat 143 167
IPR002885 Pentatricopeptide_repeat 170 194
IPR002885 Pentatricopeptide_repeat 347 372
No external refs found!