AMTR_s00010p00264070 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.496

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor

Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree ,
OG_06_0001523 (SeedPlants) Phylogenetic Tree(s): OG_06_0001523_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00010p00264070
Cluster	HCCA: Cluster_34

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00160p00046100	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
AT1G07640	OBP2	Dof-type zinc finger DNA-binding family protein	0.02	Archaeplastida
AT1G21340	No alias	Dof-type zinc finger DNA-binding family protein	0.05	Archaeplastida
AT1G26790	No alias	Dof-type zinc finger DNA-binding family protein	0.04	Archaeplastida
AT1G29160	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT2G34140	No alias	Dof-type zinc finger DNA-binding family protein	0.05	Archaeplastida
AT2G37590	DOF2.4, ATDOF2.4	DNA binding with one finger 2.4	0.03	Archaeplastida
AT2G46590	DAG2	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT3G47500	CDF3	cycling DOF factor 3	0.04	Archaeplastida
AT3G55370	OBP3	OBF-binding protein 3	0.03	Archaeplastida
AT4G24060	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT4G38000	DOF4.7	DNA binding with one finger 4.7	0.03	Archaeplastida
AT5G60200	TMO6	TARGET OF MONOPTEROS 6	0.06	Archaeplastida
AT5G62430	CDF1	cycling DOF factor 1	0.04	Archaeplastida
AT5G65590	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT5G66940	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
GSVIVT01005057001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01007758001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.06	Archaeplastida
GSVIVT01011138001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01016538001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01021085001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Gb_20144	No alias	transcription factor (DOF)	0.03	Archaeplastida
Gb_31997	No alias	transcription factor (DOF)	0.03	Archaeplastida
Gb_35447	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os01g55340.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os02g47810.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os03g16850.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os04g47990.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os04g58190.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os07g32510.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os07g48570.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os08g38220.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os12g38200.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
MA_16692g0010	No alias	transcription factor (DOF)	0.02	Archaeplastida
Mp2g20790.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Pp3c13_21190V3.1	No alias	cycling DOF factor 3	0.02	Archaeplastida
Pp3c15_3180V3.1	No alias	cycling DOF factor 3	0.02	Archaeplastida
Pp3c17_3860V3.1	No alias	OBF binding protein 4	0.02	Archaeplastida
Pp3c17_7930V3.1	No alias	cycling DOF factor 2	0.03	Archaeplastida
Pp3c3_26370V3.1	No alias	cycling DOF factor 3	0.03	Archaeplastida
Pp3c9_4910V3.1	No alias	cycling DOF factor 2	0.03	Archaeplastida
Solyc01g096120.3.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
Solyc02g067230.3.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
Solyc02g077960.3.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc02g078620.1.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc02g090310.1.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc03g082840.3.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
Solyc03g121400.1.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc05g007880.4.1	No alias	Cyclic dof factor 2 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Solyc06g069760.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc06g075370.3.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc10g009360.4.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc11g010940.2.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e000526_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e003086_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e004476_P002	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e004809_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e005107_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e007228_P002	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e011750_P002	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e012824_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e015414_P004	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e015597_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e018163_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e019172_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e023218_P004	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e023334_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e027411_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e027634_P002	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e028042_P002	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e028672_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e029641_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e035074_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e035892_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e038479_P002	No alias	transcription factor (DOF)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006855	drug transmembrane transport	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
MF	GO:0015238	drug transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015297	antiporter activity	IEP	Neighborhood
BP	GO:0015893	drug transport	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0033897	ribonuclease T2 activity	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	124	185

External Links

No external refs found!

AMTR_s00010p00264070 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation