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  5. LOC_Os11g25560.1

LOC_Os11g25560.1


Description : transcription factor (bHLH). transcriptional regulator (CIB)


Gene families : OG0000051 (Archaeplastida) Phylogenetic Tree(s): OG0000051_tree ,
OG_05_0000091 (LandPlants) Phylogenetic Tree(s): OG_05_0000091_tree ,
OG_06_0017578 (SeedPlants) Phylogenetic Tree(s): OG_06_0017578_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g25560.1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00138470 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
AT1G10120 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 Archaeplastida
AT1G18400 BEE1 BR enhanced expression 1 0.05 Archaeplastida
AT1G59640 BPEp, ZCW32, BPE, BPEub BIG PETAL P 0.03 Archaeplastida
AT1G73830 BEE3 BR enhanced expression 3 0.03 Archaeplastida
AT4G34530 CIB1 cryptochrome-interacting basic-helix-loop-helix 1 0.02 Archaeplastida
AT4G36540 BEE2 BR enhanced expression 2 0.05 Archaeplastida
AT5G48560 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
GSVIVT01004930001 No alias External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
GSVIVT01007389001 No alias External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
GSVIVT01011873001 No alias External stimuli response.light.UV-A/blue... 0.05 Archaeplastida
GSVIVT01021032001 No alias External stimuli response.light.UV-A/blue... 0.04 Archaeplastida
GSVIVT01033350001 No alias External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
Gb_12493 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.05 Archaeplastida
Gb_24992 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Gb_36369 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Gb_39758 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.09 Archaeplastida
LOC_Os04g28280.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
LOC_Os06g41060.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
MA_10435000g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_158362g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
MA_42080g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
MA_9115341g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
MA_939320g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mpzg01410.1 No alias transcription factor (bHLH) 0.06 Archaeplastida
Pp3c14_24020V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c16_7710V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
Pp3c17_17000V3.1 No alias LJRHL1-like 1 0.02 Archaeplastida
Pp3c20_590V3.1 No alias cryptochrome-interacting basic-helix-loop-helix 5 0.04 Archaeplastida
Pp3c2_2660V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
Smo24892 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Smo425336 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Solyc04g005220.3.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Solyc04g007300.4.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Solyc04g077480.3.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.05 Archaeplastida
Solyc06g072520.2.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Solyc07g005400.3.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc09g065820.4.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc12g010170.2.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc12g098620.2.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
Zm00001e010060_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e011084_P002 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Zm00001e011410_P001 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Zm00001e012110_P003 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Zm00001e018857_P002 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.06 Archaeplastida
Zm00001e021418_P001 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e022005_P003 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.06 Archaeplastida
Zm00001e023327_P001 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Zm00001e034446_P001 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
Zm00001e036318_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
MF GO:0070569 uridylyltransferase activity IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!