1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os11g29360.1

LOC_Os11g29360.1


Description : Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana (sp|q9fjy7|pp449_arath : 275.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000789 (LandPlants) Phylogenetic Tree(s): OG_05_0000789_tree ,
OG_06_0014141 (SeedPlants) Phylogenetic Tree(s): OG_06_0014141_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g29360.1
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00064890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
AT2G46050 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Archaeplastida
AT3G14330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01015318001 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.03 Archaeplastida
GSVIVT01018018001 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.04 Archaeplastida
GSVIVT01025569001 No alias Pentatricopeptide repeat-containing protein At5g66500,... 0.03 Archaeplastida
GSVIVT01027525001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Solyc03g114660.1.1 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.03 Archaeplastida
Solyc07g042130.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e002505_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e010837_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 Archaeplastida
Zm00001e014549_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Zm00001e018565_P001 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.03 Archaeplastida
Zm00001e026608_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e033335_P001 No alias Pentatricopeptide repeat-containing protein At5g61800... 0.03 Archaeplastida
Zm00001e039305_P001 No alias RNA editing factor (MEF13) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 295 339
IPR002885 Pentatricopeptide_repeat 369 393
IPR002885 Pentatricopeptide_repeat 190 220
IPR002885 Pentatricopeptide_repeat 268 293
IPR002885 Pentatricopeptide_repeat 400 427
No external refs found!