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  5. LOC_Os11g32270.1

LOC_Os11g32270.1


Description : no hits & (original description: none)


Gene families : OG0000238 (Archaeplastida) Phylogenetic Tree(s): OG0000238_tree ,
OG_05_0001578 (LandPlants) Phylogenetic Tree(s): OG_05_0001578_tree ,
OG_06_0001341 (SeedPlants) Phylogenetic Tree(s): OG_06_0001341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g32270.1
Cluster HCCA: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
AT5G01660 No alias CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch,... 0.03 Archaeplastida
GSVIVT01032736001 No alias B2 protein OS=Daucus carota 0.02 Archaeplastida
Gb_00306 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10429587g0010 No alias B2 protein OS=Daucus carota (sp|p37707|b2_dauca : 92.8) 0.02 Archaeplastida
MA_121889g0010 No alias B2 protein OS=Daucus carota (sp|p37707|b2_dauca : 98.2) 0.02 Archaeplastida
MA_15917g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc09g015120.4.1 No alias B2 protein OS=Daucus carota (sp|p37707|b2_dauca : 105.0) 0.03 Archaeplastida
Zm00001e023900_P003 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e025841_P002 No alias B2 protein OS=Daucus carota (sp|p37707|b2_dauca : 116.0) 0.03 Archaeplastida
Zm00001e030859_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e031088_P005 No alias B2 protein OS=Daucus carota (sp|p37707|b2_dauca : 110.0) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000781 chromosome, telomeric region IEP Neighborhood
CC GO:0000784 nuclear chromosome, telomeric region IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR013989 Dev_and_cell_death_domain 46 167
IPR013989 Dev_and_cell_death_domain 243 364
No external refs found!