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  5. LOC_Os11g35390.1

LOC_Os11g35390.1


Description : transcription factor (MYB)


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0000815 (SeedPlants) Phylogenetic Tree(s): OG_06_0000815_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g35390.1
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00264600 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AMTR_s00076p00157170 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AT1G14350 AtMYB124, MYB124, FLP Duplicated homeodomain-like superfamily protein 0.04 Archaeplastida
AT3G27785 PGA37, ATMYB118, MYB118 myb domain protein 118 0.02 Archaeplastida
AT3G53200 AtMYB27, MYB27 myb domain protein 27 0.02 Archaeplastida
AT4G28110 MYB41, AtMYB41 myb domain protein 41 0.03 Archaeplastida
Cpa|evm.model.tig00000448.26 No alias RNA biosynthesis.transcriptional activation.MYB... 0.01 Archaeplastida
Cpa|evm.model.tig00021108.38 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Cre02.g108350 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01000232001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
GSVIVT01003662001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01004851001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01007731001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01007740001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01009280001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01011436001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01013126001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01024353001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01024774001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01035041001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01035177001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01036712001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
Gb_03994 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_32143 No alias transcription factor (MYB) 0.04 Archaeplastida
Gb_39852 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os03g27090.1 No alias transcription factor (MYB) 0.04 Archaeplastida
MA_10434028g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_15687g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_158319g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_55123g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_64405g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_79447g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c16_9970V3.1 No alias myb domain protein 106 0.02 Archaeplastida
Pp3c25_3170V3.1 No alias myb domain protein 16 0.02 Archaeplastida
Pp3c4_13790V3.1 No alias myb domain protein 105 0.03 Archaeplastida
Smo84195 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
Solyc01g010910.2.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc01g094360.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc02g089190.2.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc03g005570.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc03g116100.3.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc04g056310.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc04g078420.1.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc05g053150.2.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc06g009710.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc07g054840.4.1 No alias transcription factor (MYB) 0.05 Archaeplastida
Solyc08g008480.4.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc08g076700.1.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc08g076710.3.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc09g090790.3.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc10g008700.3.1 No alias No annotation 0.04 Archaeplastida
Zm00001e001399_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e007904_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e008489_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e011944_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e014925_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e020754_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e022450_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e024606_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e033519_P001 No alias transcription factor (MYB) 0.05 Archaeplastida
Zm00001e034118_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e035025_P001 No alias transcription factor (MYB) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 15 62
IPR001005 SANT/Myb 68 113
No external refs found!