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  5. AMTR_s00011p00195950

AMTR_s00011p00195950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.62

Description : Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0012004 (LandPlants) Phylogenetic Tree(s): OG_05_0012004_tree ,
OG_06_0012058 (SeedPlants) Phylogenetic Tree(s): OG_06_0012058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00195950
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G24000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01002055001 No alias Nucleotide metabolism.deoxynucleotide metabolism.thymidine kinase 0.02 Archaeplastida
GSVIVT01014727001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
GSVIVT01028022001 No alias Pentatricopeptide repeat-containing protein At3g62890... 0.02 Archaeplastida
GSVIVT01036207001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
Gb_00199 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
LOC_Os02g40750.1 No alias Pentatricopeptide repeat-containing protein At1g33350... 0.02 Archaeplastida
LOC_Os02g49830.1 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.02 Archaeplastida
LOC_Os07g19400.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.02 Archaeplastida
LOC_Os11g10740.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 Archaeplastida
Pp3c19_930V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Pp3c5_15090V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Smo81196 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Solyc02g005280.1.1 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.03 Archaeplastida
Solyc02g087610.1.1 No alias Pentatricopeptide repeat-containing protein At3g28660... 0.02 Archaeplastida
Solyc05g023900.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc06g053850.4.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Solyc11g008940.1.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Zm00001e030553_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 75 96
IPR002885 Pentatricopeptide_repeat 5 47
No external refs found!