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  5. AMTR_s00011p00198170

AMTR_s00011p00198170 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.65

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS25 component


Gene families : OG0002355 (Archaeplastida) Phylogenetic Tree(s): OG0002355_tree ,
OG_05_0002220 (LandPlants) Phylogenetic Tree(s): OG_05_0002220_tree ,
OG_06_0002447 (SeedPlants) Phylogenetic Tree(s): OG_06_0002447_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00198170
Cluster HCCA: Cluster_263

Target Alias Description ECC score Gene Family Method Actions
AT2G21580 No alias Ribosomal protein S25 family protein 0.08 Archaeplastida
AT4G34555 No alias Ribosomal protein S25 family protein 0.06 Archaeplastida
AT4G39200 No alias Ribosomal protein S25 family protein 0.07 Archaeplastida
Cpa|evm.model.tig00000037.5 No alias 40S ribosomal protein S25-4 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre08.g382500 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
GSVIVT01000974001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
GSVIVT01010721001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
GSVIVT01023806001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Gb_01693 No alias component RPS25 of SSU proteome 0.03 Archaeplastida
Gb_29693 No alias component RPS25 of SSU proteome 0.04 Archaeplastida
LOC_Os08g44480.1 No alias component RPS25 of SSU proteome 0.07 Archaeplastida
LOC_Os09g39540.1 No alias component RPS25 of SSU proteome 0.06 Archaeplastida
LOC_Os11g05562.1 No alias component RPS25 of SSU proteome 0.05 Archaeplastida
MA_104137g0010 No alias component RPS25 of SSU proteome 0.05 Archaeplastida
MA_10430279g0010 No alias component RPS25 of SSU proteome 0.06 Archaeplastida
Mp4g06120.1 No alias component RPS25 of SSU proteome 0.06 Archaeplastida
Pp3c14_13580V3.1 No alias Ribosomal protein S25 family protein 0.09 Archaeplastida
Pp3c17_4670V3.1 No alias Ribosomal protein S25 family protein 0.09 Archaeplastida
Pp3c1_25330V3.1 No alias Ribosomal protein S25 family protein 0.07 Archaeplastida
Smo172404 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
Solyc02g069850.3.1 No alias component RPS25 of SSU proteome 0.04 Archaeplastida
Zm00001e003921_P001 No alias component RPS25 of SSU proteome 0.03 Archaeplastida
Zm00001e019589_P001 No alias component RPS25 of SSU proteome 0.05 Archaeplastida
Zm00001e028930_P001 No alias component RPS25 of SSU proteome 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005853 eukaryotic translation elongation factor 1 complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006450 regulation of translational fidelity IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004977 Ribosomal_S25 1 106
No external refs found!