1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00011p00218290

AMTR_s00011p00218290 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.91

Description : RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC3 promotor-binding component


Gene families : OG0001366 (Archaeplastida) Phylogenetic Tree(s): OG0001366_tree ,
OG_05_0002356 (LandPlants) Phylogenetic Tree(s): OG_05_0002356_tree ,
OG_06_0001042 (SeedPlants) Phylogenetic Tree(s): OG_06_0001042_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00218290
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001428.4 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.02 Archaeplastida
Cre12.g518107 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.03 Archaeplastida
Gb_30476 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.03 Archaeplastida
LOC_Os02g21190.1 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.06 Archaeplastida
Mp1g26830.1 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.02 Archaeplastida
Zm00001e015829_P001 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
BP GO:0044237 cellular metabolic process IEA Interproscan
MF GO:0050662 coenzyme binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0008381 mechanosensitive ion channel activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0071203 WASH complex IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 5 95
No external refs found!