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  5. LOC_Os11g41140.1

LOC_Os11g41140.1


Description : E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana (sp|q8le94|ring3_arath : 149.0)


Gene families : OG0000951 (Archaeplastida) Phylogenetic Tree(s): OG0000951_tree ,
OG_05_0000709 (LandPlants) Phylogenetic Tree(s): OG_05_0000709_tree ,
OG_06_0000552 (SeedPlants) Phylogenetic Tree(s): OG_06_0000552_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g41140.1
Cluster HCCA: Cluster_489

Target Alias Description ECC score Gene Family Method Actions
AT5G38895 No alias RING/U-box superfamily protein 0.05 Archaeplastida
Pp3c23_21240V3.1 No alias RING/U-box superfamily protein 0.05 Archaeplastida
Solyc02g089240.3.1 No alias E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.02 Archaeplastida
Solyc08g081300.4.1 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.02 Archaeplastida
Zm00001e002639_P004 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.02 Archaeplastida
Zm00001e012916_P001 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 169 210
No external refs found!