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  5. LOC_Os11g41640.1

LOC_Os11g41640.1


Description : transcription factor (bHLH)


Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0000040 (LandPlants) Phylogenetic Tree(s): OG_05_0000040_tree ,
OG_06_0000031 (SeedPlants) Phylogenetic Tree(s): OG_06_0000031_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g41640.1
Cluster HCCA: Cluster_548

Target Alias Description ECC score Gene Family Method Actions
AT1G27740 RSL4 root hair defective 6-like 4 0.04 Archaeplastida
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.02 Archaeplastida
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT4G33880 RSL2 ROOT HAIR DEFECTIVE 6-LIKE 2 0.04 Archaeplastida
LOC_Os01g02110.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
MA_100071g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_10156436g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_29441g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
MA_83500g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
Mp3g23300.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Mp6g21470.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
Pp3c14_23520V3.1 No alias phytochrome interacting factor 3 0.02 Archaeplastida
Pp3c16_21590V3.1 No alias ROOT HAIR DEFECTIVE 6-LIKE 2 0.03 Archaeplastida
Smo404767 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Smo409967 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
Smo413232 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.06 Archaeplastida
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e018003_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e038765_P001 No alias transcription factor (bHLH) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Neighborhood
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 171 211
No external refs found!