AMTR_s00011p00238180 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.130

Description : RNA biosynthesis.transcriptional activation.TUB transcription factor


Gene families : OG0000335 (Archaeplastida) Phylogenetic Tree(s): OG0000335_tree ,
OG_05_0000295 (LandPlants) Phylogenetic Tree(s): OG_05_0000295_tree ,
OG_06_0000341 (SeedPlants) Phylogenetic Tree(s): OG_06_0000341_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00238180
Cluster HCCA: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
AT2G18280 TLP2, AtTLP2 tubby like protein 2 0.03 Archaeplastida
LOC_Os01g64700.2 No alias transcription factor (TUB) 0.02 Archaeplastida
LOC_Os04g59130.1 No alias transcription factor (TUB) 0.02 Archaeplastida
LOC_Os11g06420.1 No alias transcription factor (TUB) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004520 endodeoxyribonuclease activity IEP Neighborhood
MF GO:0004536 deoxyribonuclease activity IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
MF GO:0008193 tRNA guanylyltransferase activity IEP Neighborhood
MF GO:0008474 palmitoyl-(protein) hydrolase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051205 protein insertion into membrane IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
MF GO:0098599 palmitoyl hydrolase activity IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
InterPro domains Description Start Stop
IPR000007 Tubby_C 30 320
No external refs found!