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  5. LOC_Os11g48000.1

LOC_Os11g48000.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000055 (Archaeplastida) Phylogenetic Tree(s): OG0000055_tree ,
OG_05_0000021 (LandPlants) Phylogenetic Tree(s): OG_05_0000021_tree ,
OG_06_0000388 (SeedPlants) Phylogenetic Tree(s): OG_06_0000388_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g48000.1
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00186840 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AMTR_s00036p00048090 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00057p00086480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
AMTR_s00079p00109960 evm_27.TU.AmTr_v1... Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
AMTR_s00079p00169240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.08 Archaeplastida
AMTR_s00082p00184630 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AMTR_s00088p00145510 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
AMTR_s00124p00105750 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00149p00097070 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
AT1G10480 ZFP5 zinc finger protein 5 0.03 Archaeplastida
AT3G23130 SUP, FLO10, FON1 C2H2 and C2HC zinc fingers superfamily protein 0.04 Archaeplastida
AT3G53820 No alias C2H2 and C2HC zinc fingers superfamily protein 0.05 Archaeplastida
AT5G10970 No alias C2H2 and C2HC zinc fingers superfamily protein 0.04 Archaeplastida
AT5G14010 KNU C2H2 and C2HC zinc fingers superfamily protein 0.04 Archaeplastida
AT5G25160 ZFP3 zinc finger protein 3 0.03 Archaeplastida
GSVIVT01011868001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
GSVIVT01013168001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
GSVIVT01016493001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01031007001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
Gb_04808 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_12546 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Gb_26860 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os05g20930.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
MA_357706g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_424g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_54742g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_5999529g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c7_19440V3.1 No alias zinc-finger protein 10 0.02 Archaeplastida
Solyc03g117070.1.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Solyc05g006310.3.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Solyc05g009180.1.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Solyc08g077000.1.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Solyc09g066250.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc09g089590.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc10g084910.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc11g011890.2.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Zm00001e009854_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e011910_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e016256_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e017009_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e022212_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e030783_P001 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Zm00001e032639_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e034883_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e036220_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e036816_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!