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  5. LOC_Os12g02220.1

LOC_Os12g02220.1


Description : no hits & (original description: none)


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0019965 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0029625 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g02220.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00271850 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00008p00200880 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00021p00161170 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
AMTR_s00102p00069840 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G49200 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT1G49210 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT1G49230 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT1G67856 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT2G17450 RHA3A RING-H2 finger A3A 0.02 Archaeplastida
AT2G17730 NIP2 NEP-interacting protein 2 0.02 Archaeplastida
AT3G05200 ATL6 RING/U-box superfamily protein 0.02 Archaeplastida
AT3G16720 ATL2, TL2 TOXICOS EN LEVADURA 2 0.03 Archaeplastida
AT4G00305 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G09100 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G35480 RHA3B RING-H2 finger A3B 0.04 Archaeplastida
AT4G38140 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT5G40250 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G58580 ATL63, TL63 TOXICOS EN LEVADURA 63 0.02 Archaeplastida
Cpa|evm.model.tig00000821.27 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Cre01.g051700 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
GSVIVT01000015001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01000538001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012020001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01016564001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_04642 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_05004 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.02 Archaeplastida
Gb_14775 No alias RING-H2 finger protein ATL78 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Gb_14777 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_14788 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_15836 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_23076 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os02g35347.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os02g35365.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os02g36300.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g37450.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os02g45780.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os04g49550.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os05g39260.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os06g45580.1 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os07g34180.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os09g36500.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10106144g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_10208579g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10427748g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10429091g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_10433358g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10436650g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_12363g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_214717g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_25345g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_26001g0020 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_308999g0010 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_308999g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_465316g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_5319g0010 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
MA_569551g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_6931619g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_8338g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_83882g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_8609304g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_904294g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_9143538g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp4g04600.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp5g08270.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Pp3c17_13190V3.1 No alias RING/U-box superfamily protein 0.01 Archaeplastida
Pp3c1_32230V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c1_9560V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c23_1651V3.1 No alias RING/U-box superfamily protein 0.05 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.01 Archaeplastida
Pp3c4_30240V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Smo96681 No alias Protein degradation.peptide tagging.Ubiquitin... 0.12 Archaeplastida
Solyc01g006910.4.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc01g109200.4.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc03g112340.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc04g007500.1.1 No alias RHA2 signal transducer of abscisic acid perception 0.02 Archaeplastida
Solyc05g010175.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc05g018760.3.1 No alias ubiquitin protein ligase (XERICO) 0.02 Archaeplastida
Solyc06g053640.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc09g075320.1.1 No alias RING-H2-class E3 ligase 0.11 Archaeplastida
Solyc10g011880.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc11g066510.3.1 No alias RING-H2-class E3 ligase 0.09 Archaeplastida
Solyc12g055710.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e003126_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003426_P001 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
Zm00001e009017_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e009988_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e010029_P001 No alias ubiquitin protein ligase (XERICO) 0.02 Archaeplastida
Zm00001e010787_P001 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e013412_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e013809_P001 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e014709_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e014764_P001 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Zm00001e015470_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e015905_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Zm00001e017509_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e017960_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e018028_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e021729_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e022742_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023234_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e023238_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023723_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e024702_P002 No alias NEP1-interacting protein-like 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e026193_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e029032_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Zm00001e031874_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e032186_P001 No alias no hits & (original description: none) 0.1 Archaeplastida
Zm00001e036691_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e041385_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e041409_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 71 122
No external refs found!