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  5. LOC_Os12g03090.1

LOC_Os12g03090.1


Description : component RPS16 of SSU proteome


Gene families : OG0002343 (Archaeplastida) Phylogenetic Tree(s): OG0002343_tree ,
OG_05_0002210 (LandPlants) Phylogenetic Tree(s): OG_05_0002210_tree ,
OG_06_0002828 (SeedPlants) Phylogenetic Tree(s): OG_06_0002828_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g03090.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00161540 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
AMTR_s00046p00076360 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
AT2G09990 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.16 Archaeplastida
Cpa|evm.model.tig00000123.14 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
Cre13.g573351 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 Archaeplastida
GSVIVT01017923001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 Archaeplastida
Gb_05712 No alias component RPS16 of SSU proteome 0.11 Archaeplastida
MA_2656g0010 No alias 40S ribosomal protein S16 OS=Gossypium hirsutum... 0.07 Archaeplastida
MA_32670g0010 No alias component RPS16 of SSU proteome 0.13 Archaeplastida
Mp1g07720.1 No alias component RPS16 of SSU proteome 0.13 Archaeplastida
Mp1g14290.1 No alias component RPS16 of SSU proteome 0.13 Archaeplastida
Pp3c18_1350V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.15 Archaeplastida
Pp3c19_22410V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.16 Archaeplastida
Pp3c21_20630V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.15 Archaeplastida
Pp3c22_21090V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.16 Archaeplastida
Pp3c9_4180V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.13 Archaeplastida
Smo138369 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
Solyc01g068530.3.1 No alias component RPS16 of SSU proteome 0.19 Archaeplastida
Solyc04g026100.1.1 No alias component RPS16 of SSU proteome 0.2 Archaeplastida
Solyc05g005690.1.1 No alias component RPS16 of SSU proteome 0.2 Archaeplastida
Zm00001e009230_P001 No alias component RPS16 of SSU proteome 0.24 Archaeplastida
Zm00001e020865_P003 No alias component RPS16 of SSU proteome 0.26 Archaeplastida
Zm00001e039245_P001 No alias component RPS16 of SSU proteome 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000754 Ribosomal_S9 17 149
No external refs found!