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  5. LOC_Os12g03880.1

LOC_Os12g03880.1


Description : component RPP0 of LSU proteome component


Gene families : OG0002275 (Archaeplastida) Phylogenetic Tree(s): OG0002275_tree ,
OG_05_0001766 (LandPlants) Phylogenetic Tree(s): OG_05_0001766_tree ,
OG_06_0002404 (SeedPlants) Phylogenetic Tree(s): OG_06_0002404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g03880.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00231170 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
AT3G09200 No alias Ribosomal protein L10 family protein 0.2 Archaeplastida
AT3G11250 No alias Ribosomal protein L10 family protein 0.14 Archaeplastida
Cpa|evm.model.tig00000615.69 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
Cre12.g520500 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
GSVIVT01016313001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
GSVIVT01032857001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Gb_00059 No alias component RPP0 of LSU proteome component 0.03 Archaeplastida
MA_10433058g0020 No alias component RPP0 of LSU proteome component 0.05 Archaeplastida
Mp1g07120.1 No alias component RPP0 of LSU proteome component 0.21 Archaeplastida
Pp3c11_3700V3.1 No alias Ribosomal protein L10 family protein 0.04 Archaeplastida
Pp3c1_8280V3.1 No alias Ribosomal protein L10 family protein 0.08 Archaeplastida
Smo149765 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
Smo437282 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Solyc05g054580.3.1 No alias component RPP0 of LSU proteome component 0.14 Archaeplastida
Zm00001e021786_P001 No alias component RPP0 of LSU proteome component 0.17 Archaeplastida
Zm00001e029292_P001 No alias component RPP0 of LSU proteome component 0.19 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004819 glutamine-tRNA ligase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001790 Ribosomal_L10P 8 108
No external refs found!