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  5. LOC_Os12g04180.2

LOC_Os12g04180.2


Description : Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana (sp|q9asp6|hnrpq_arath : 324.0)


Gene families : OG0002304 (Archaeplastida) Phylogenetic Tree(s): OG0002304_tree ,
OG_05_0002049 (LandPlants) Phylogenetic Tree(s): OG_05_0002049_tree ,
OG_06_0002095 (SeedPlants) Phylogenetic Tree(s): OG_06_0002095_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g04180.2
Cluster HCCA: Cluster_348

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.20 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00020961.48 No alias No description available 0.01 Archaeplastida
Cre03.g169150 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 Archaeplastida
Mp1g12580.1 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 Archaeplastida
Pp3c12_1580V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 284 352
IPR000504 RRM_dom 113 181
IPR000504 RRM_dom 191 255
No external refs found!