1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00011p00255340

AMTR_s00011p00255340 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.170

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.zf-HD transcription factor


Gene families : OG0000209 (Archaeplastida) Phylogenetic Tree(s): OG0000209_tree ,
OG_05_0000122 (LandPlants) Phylogenetic Tree(s): OG_05_0000122_tree ,
OG_06_0000088 (SeedPlants) Phylogenetic Tree(s): OG_06_0000088_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00255340
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AT1G14687 AtHB32, HB32, ZHD14 homeobox protein 32 0.02 Archaeplastida
AT1G69600 ATHB29, ZFHD1, ZHD11 zinc finger homeodomain 1 0.04 Archaeplastida
AT1G74660 MIF1 mini zinc finger 1 0.03 Archaeplastida
AT2G18350 AtHB24, ZHD6, HB24 homeobox protein 24 0.04 Archaeplastida
AT5G65410 ZHD1, ZFHD2, HB25, ATHB25 homeobox protein 25 0.03 Archaeplastida
GSVIVT01003614001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01012772001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Gb_15163 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Gb_18045 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_91212g0010 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Pp3c21_11010V3.1 No alias homeobox protein 22 0.02 Archaeplastida
Pp3c2_21160V3.1 No alias homeobox protein 33 0.02 Archaeplastida
Pp3c7_15000V3.1 No alias homeobox protein 33 0.02 Archaeplastida
Smo38995 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
Solyc01g102980.3.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Solyc02g067310.4.1 No alias transcription factor (zf-HD) 0.08 Archaeplastida
Solyc02g067320.3.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Solyc04g080490.4.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Solyc05g007580.1.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Zm00001e004112_P001 No alias No annotation 0.05 Archaeplastida
Zm00001e009830_P001 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Zm00001e015590_P001 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Zm00001e034407_P001 No alias transcription factor (zf-HD) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 44 100
No external refs found!