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  5. AMTR_s00011p00256770

AMTR_s00011p00256770 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.176

Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0005457 (Archaeplastida) Phylogenetic Tree(s): OG0005457_tree ,
OG_05_0005665 (LandPlants) Phylogenetic Tree(s): OG_05_0005665_tree ,
OG_06_0006811 (SeedPlants) Phylogenetic Tree(s): OG_06_0006811_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00256770
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000142.2 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.01 Archaeplastida
Cre06.g305200 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01012145001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
LOC_Os09g38790.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_10435270g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Mp4g13860.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Pp3c22_1400V3.1 No alias zinc finger (C2H2 type) family protein 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!