LOC_Os12g06630.2


Description : transcription factor (TUB)


Gene families : OG0000335 (Archaeplastida) Phylogenetic Tree(s): OG0000335_tree ,
OG_05_0000295 (LandPlants) Phylogenetic Tree(s): OG_05_0000295_tree ,
OG_06_0000341 (SeedPlants) Phylogenetic Tree(s): OG_06_0000341_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g06630.2
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
AMTR_s00057p00153680 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
Cre12.g520650 No alias RNA biosynthesis.transcriptional activation.TUB... 0.01 Archaeplastida
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.05 Archaeplastida
Gb_22686 No alias transcription factor (TUB) 0.02 Archaeplastida
LOC_Os01g48370.1 No alias transcription factor (TUB) 0.04 Archaeplastida
LOC_Os08g01290.5 No alias transcription factor (TUB) 0.03 Archaeplastida
MA_103920g0010 No alias transcription factor (TUB) 0.04 Archaeplastida
MA_18086g0010 No alias transcription factor (TUB) 0.05 Archaeplastida
MA_7878406g0010 No alias No annotation 0.02 Archaeplastida
Pp3c20_2160V3.1 No alias tubby like protein 3 0.03 Archaeplastida
Pp3c20_2190V3.1 No alias tubby like protein 3 0.03 Archaeplastida
Smo85745 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
Zm00001e023326_P001 No alias transcription factor (TUB) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
CC GO:0070652 HAUS complex IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 58 111
IPR000007 Tubby_C 122 440
No external refs found!