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  5. LOC_Os12g06870.1

LOC_Os12g06870.1


Description : NUP98 nucleoporin of nuclear pore complex


Gene families : OG0001288 (Archaeplastida) Phylogenetic Tree(s): OG0001288_tree ,
OG_05_0003828 (LandPlants) Phylogenetic Tree(s): OG_05_0003828_tree ,
OG_06_0003888 (SeedPlants) Phylogenetic Tree(s): OG_06_0003888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g06870.1
Cluster HCCA: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00231390 evm_27.TU.AmTr_v1... Nuclear pore complex protein NUP96 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G59660 No alias Nucleoporin autopeptidase 0.05 Archaeplastida
Cpa|evm.model.tig00000663.22 No alias No description available 0.02 Archaeplastida
LOC_Os03g07580.1 No alias NUP96 scaffold nucleoporin of nuclear pore complex 0.02 Archaeplastida
MA_10427433g0010 No alias Nuclear pore complex protein NUP98A OS=Arabidopsis... 0.02 Archaeplastida
MA_548894g0010 No alias Nuclear pore complex protein NUP98A OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007230 Peptidase_S59 804 950
No external refs found!