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  5. LOC_Os12g07010.1

LOC_Os12g07010.1


Description : component RPL3 of LSU proteome component


Gene families : OG0002284 (Archaeplastida) Phylogenetic Tree(s): OG0002284_tree ,
OG_05_0002131 (LandPlants) Phylogenetic Tree(s): OG_05_0002131_tree ,
OG_06_0002300 (SeedPlants) Phylogenetic Tree(s): OG_06_0002300_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g07010.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00269670 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
AMTR_s00060p00174830 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
AMTR_s00135p00091990 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 Archaeplastida
AT1G43170 RP1, RPL3A, emb2207, ARP1 ribosomal protein 1 0.31 Archaeplastida
Cpa|evm.model.tig00000025.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.35 Archaeplastida
Cre10.g417700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
GSVIVT01023241001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
GSVIVT01034555001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.3 Archaeplastida
Gb_35746 No alias component RPL3 of LSU proteome component 0.1 Archaeplastida
MA_10432758g0010 No alias component RPL3 of LSU proteome component 0.2 Archaeplastida
MA_124178g0010 No alias component RPL3 of LSU proteome component 0.2 Archaeplastida
Mp1g18990.1 No alias component RPL3 of LSU proteome component 0.45 Archaeplastida
Pp3c10_25460V3.1 No alias R-protein L3 B 0.12 Archaeplastida
Pp3c5_27000V3.1 No alias R-protein L3 B 0.05 Archaeplastida
Pp3c5_27030V3.1 No alias R-protein L3 B 0.11 Archaeplastida
Smo270706 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
Solyc01g104590.3.1 No alias component RPL3 of LSU proteome component 0.45 Archaeplastida
Zm00001e001224_P002 No alias component RPL3 of LSU proteome component 0.23 Archaeplastida
Zm00001e008122_P001 No alias component RPL3 of LSU proteome component 0.21 Archaeplastida
Zm00001e008127_P001 No alias component RPL3 of LSU proteome component 0.24 Archaeplastida
Zm00001e009061_P001 No alias component RPL3 of LSU proteome component 0.27 Archaeplastida
Zm00001e009065_P002 No alias component RPL3 of LSU proteome component 0.31 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004019 adenylosuccinate synthase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 1 370
No external refs found!