1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g17080.1

LOC_Os12g17080.1


Description : Pentatricopeptide repeat-containing protein OGR1, mitochondrial OS=Oryza sativa subsp. japonica (sp|b8yek4|ogr1_orysj : 1035.0)


Gene families : OG0012179 (Archaeplastida) Phylogenetic Tree(s): OG0012179_tree ,
OG_05_0012109 (LandPlants) Phylogenetic Tree(s): OG_05_0012109_tree ,
OG_06_0012203 (SeedPlants) Phylogenetic Tree(s): OG_06_0012203_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g17080.1
Cluster HCCA: Cluster_312

Target Alias Description ECC score Gene Family Method Actions
Solyc04g072170.1.1 No alias Pentatricopeptide repeat-containing protein At1g34160... 0.05 Archaeplastida
Zm00001e042519_P001 No alias Pentatricopeptide repeat-containing protein OGR1,... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006528 asparagine metabolic process IEP Neighborhood
BP GO:0006529 asparagine biosynthetic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 141 173
IPR002885 Pentatricopeptide_repeat 255 279
IPR002885 Pentatricopeptide_repeat 321 347
IPR002885 Pentatricopeptide_repeat 287 313
IPR002885 Pentatricopeptide_repeat 179 203
IPR032867 DYW_dom 454 577
No external refs found!