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  5. LOC_Os12g18630.1

LOC_Os12g18630.1


Description : Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana (sp|q9fgp9|rer1_arath : 91.7)


Gene families : OG0004357 (Archaeplastida) Phylogenetic Tree(s): OG0004357_tree ,
OG_05_0003975 (LandPlants) Phylogenetic Tree(s): OG_05_0003975_tree ,
OG_06_0005827 (SeedPlants) Phylogenetic Tree(s): OG_06_0005827_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g18630.1
Cluster HCCA: Cluster_327

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020903.13 No alias No description available 0.01 Archaeplastida
Pp3c16_21290V3.1 No alias Protein of unknown function (DUF3411) 0.04 Archaeplastida
Pp3c6_100V3.1 No alias Protein of unknown function (DUF3411) 0.03 Archaeplastida
Solyc01g104270.4.1 No alias Protein RETICULATA-RELATED 1, chloroplastic... 0.03 Archaeplastida
Zm00001e017789_P001 No alias Protein RETICULATA-RELATED 1, chloroplastic... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Neighborhood
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Neighborhood
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity IEP Neighborhood
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006417 regulation of translation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006448 regulation of translational elongation IEP Neighborhood
BP GO:0006449 regulation of translational termination IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006732 coenzyme metabolic process IEP Neighborhood
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009108 coenzyme biosynthetic process IEP Neighborhood
BP GO:0009435 NAD biosynthetic process IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Neighborhood
BP GO:0019362 pyridine nucleotide metabolic process IEP Neighborhood
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019674 NAD metabolic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0034248 regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
MF GO:0043022 ribosome binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
BP GO:0043243 positive regulation of protein complex disassembly IEP Neighborhood
BP GO:0043244 regulation of protein complex disassembly IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045727 positive regulation of translation IEP Neighborhood
BP GO:0045901 positive regulation of translational elongation IEP Neighborhood
BP GO:0045905 positive regulation of translational termination IEP Neighborhood
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051130 positive regulation of cellular component organization IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051188 cofactor biosynthetic process IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051247 positive regulation of protein metabolic process IEP Neighborhood
BP GO:0072524 pyridine-containing compound metabolic process IEP Neighborhood
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0098599 palmitoyl hydrolase activity IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR021825 RETICULATA-related 154 323
No external refs found!