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  5. LOC_Os12g21470.1

LOC_Os12g21470.1


Description : no hits & (original description: none)


Gene families : OG0001754 (Archaeplastida) Phylogenetic Tree(s): OG0001754_tree ,
OG_05_0001129 (LandPlants) Phylogenetic Tree(s): OG_05_0001129_tree ,
OG_06_0000591 (SeedPlants) Phylogenetic Tree(s): OG_06_0000591_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g21470.1
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g31542.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os03g56040.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os04g17789.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os05g08660.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g25930.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os08g21410.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g28720.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os11g12710.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os11g31860.1 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 82 171
No external refs found!