1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00012p00085300

AMTR_s00012p00085300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00012.38

Description : Chromatin organisation.histones.H2B-type histone


Gene families : OG0000186 (Archaeplastida) Phylogenetic Tree(s): OG0000186_tree ,
OG_05_0000249 (LandPlants) Phylogenetic Tree(s): OG_05_0000249_tree ,
OG_06_0000187 (SeedPlants) Phylogenetic Tree(s): OG_06_0000187_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00012p00085300
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G07790 HTB1 Histone superfamily protein 0.07 Archaeplastida
AT3G45980 HTB9, H2B Histone superfamily protein 0.07 Archaeplastida
AT3G46030 HTB11 Histone superfamily protein 0.13 Archaeplastida
AT5G22880 HTB2, H2B histone B2 0.06 Archaeplastida
AT5G59910 HTB4 Histone superfamily protein 0.06 Archaeplastida
Cre06.g264800 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre06.g264900 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
Cre06.g265400 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre06.g266750 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre06.g271376 No alias Chromatin organisation.histones.H2B-type histone 0.06 Archaeplastida
Cre06.g273850 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre06.g274250 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
Cre06.g274750 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g275800 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre06.g276550 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
Cre06.g276900 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Cre12.g504550 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre12.g504700 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
Cre12.g505600 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Cre12.g506200 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
Cre13.g570050 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
Cre17.g709150 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
Cre17.g710450 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
Cre17.g711750 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
Cre17.g713450 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre17.g714050 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
GSVIVT01016164001 No alias Chromatin organisation.histones.H2B-type histone 0.06 Archaeplastida
GSVIVT01025021001 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
GSVIVT01025025001 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Gb_02245 No alias histone (H2B) 0.05 Archaeplastida
Gb_12082 No alias histone (H2B) 0.04 Archaeplastida
Gb_12096 No alias histone (H2B) 0.05 Archaeplastida
Gb_25549 No alias histone (H2B) 0.02 Archaeplastida
Gb_26315 No alias histone (H2B) 0.05 Archaeplastida
Gb_32754 No alias histone (H2B) 0.07 Archaeplastida
LOC_Os01g05610.1 No alias histone (H2B) 0.03 Archaeplastida
LOC_Os01g05630.1 No alias histone (H2B) 0.02 Archaeplastida
LOC_Os01g05900.1 No alias histone (H2B) 0.05 Archaeplastida
LOC_Os01g05970.1 No alias histone (H2B) 0.04 Archaeplastida
LOC_Os01g06010.1 No alias histone (H2B) 0.04 Archaeplastida
LOC_Os01g62230.1 No alias histone (H2B) 0.03 Archaeplastida
LOC_Os03g17084.1 No alias histone (H2B) 0.08 Archaeplastida
LOC_Os05g49860.1 No alias histone (H2B) 0.08 Archaeplastida
LOC_Os08g38300.1 No alias histone (H2B) 0.06 Archaeplastida
MA_10428006g0010 No alias histone (H2B) 0.03 Archaeplastida
MA_10435143g0010 No alias histone (H2B) 0.07 Archaeplastida
MA_10435143g0020 No alias histone (H2B) 0.02 Archaeplastida
MA_10436516g0010 No alias histone (H2B) 0.03 Archaeplastida
MA_10436516g0020 No alias histone (H2B) 0.04 Archaeplastida
MA_38565g0010 No alias histone (H2B) 0.03 Archaeplastida
MA_454575g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_6078786g0010 No alias histone (H2B) 0.08 Archaeplastida
MA_77198g0010 No alias histone (H2B) 0.03 Archaeplastida
MA_8065g0010 No alias histone (H2B) 0.04 Archaeplastida
MA_9293473g0010 No alias histone (H2B) 0.03 Archaeplastida
Mp4g13450.1 No alias histone (H2B) 0.03 Archaeplastida
Mp6g04070.1 No alias histone (H2B) 0.07 Archaeplastida
Mp6g07010.1 No alias histone (H2B) 0.02 Archaeplastida
Pp3c12_7610V3.1 No alias Histone superfamily protein 0.06 Archaeplastida
Pp3c13_23540V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Pp3c14_21050V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c17_15750V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c17_15780V3.1 No alias Histone superfamily protein 0.02 Archaeplastida
Pp3c17_15800V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Pp3c6_27740V3.1 No alias Histone superfamily protein 0.02 Archaeplastida
Smo182308 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Solyc02g038690.1.1 No alias histone (H2B) 0.07 Archaeplastida
Solyc03g071620.2.1 No alias histone (H2B) 0.04 Archaeplastida
Solyc05g055440.1.1 No alias histone (H2B) 0.05 Archaeplastida
Solyc06g074780.1.1 No alias histone (H2B) 0.05 Archaeplastida
Solyc06g074790.2.1 No alias histone (H2B) 0.07 Archaeplastida
Solyc06g075800.1.1 No alias histone (H2B) 0.08 Archaeplastida
Solyc11g007920.1.1 No alias histone (H2B) 0.06 Archaeplastida
Solyc11g007930.1.1 No alias histone (H2B) 0.07 Archaeplastida
Solyc11g066430.2.1 No alias histone (H2B) 0.07 Archaeplastida
Solyc12g013510.1.1 No alias histone (H2B) 0.03 Archaeplastida
Zm00001e004028_P001 No alias histone (H2B) 0.06 Archaeplastida
Zm00001e009857_P001 No alias histone (H2B) 0.07 Archaeplastida
Zm00001e010906_P002 No alias histone (H2B) 0.07 Archaeplastida
Zm00001e016882_P001 No alias histone (H2B) 0.1 Archaeplastida
Zm00001e019346_P001 No alias histone (H2B) 0.07 Archaeplastida
Zm00001e020484_P002 No alias histone (H2B) 0.06 Archaeplastida
Zm00001e022201_P001 No alias histone (H2B) 0.07 Archaeplastida
Zm00001e023342_P001 No alias histone (H2B) 0.08 Archaeplastida
Zm00001e027803_P001 No alias histone (H2B) 0.09 Archaeplastida
Zm00001e028779_P003 No alias histone (H2B) 0.07 Archaeplastida
Zm00001e034226_P001 No alias histone (H2B) 0.07 Archaeplastida
Zm00001e038466_P001 No alias histone (H2B) 0.06 Archaeplastida
Zm00001e039057_P002 No alias histone (H2B) 0.05 Archaeplastida
Zm00001e041296_P001 No alias histone (H2B) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009200 deoxyribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009211 pyrimidine deoxyribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009219 pyrimidine deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009262 deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019692 deoxyribose phosphate metabolic process IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030337 DNA polymerase processivity factor activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
CC GO:0043626 PCNA complex IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044796 DNA polymerase processivity factor complex IEP Neighborhood
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Neighborhood
BP GO:0046080 dUTP metabolic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 49 115
No external refs found!