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  5. AMTR_s00012p00087690

AMTR_s00012p00087690 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00012.41

Description : Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0010963 (Archaeplastida) Phylogenetic Tree(s): OG0010963_tree ,
OG_05_0010911 (LandPlants) Phylogenetic Tree(s): OG_05_0010911_tree ,
OG_06_0010842 (SeedPlants) Phylogenetic Tree(s): OG_06_0010842_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00012p00087690
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AT3G53700 MEE40 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
GSVIVT01025524001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 Archaeplastida
LOC_Os03g40020.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.06 Archaeplastida
Solyc09g010450.1.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 Archaeplastida
Zm00001e004314_P001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003913 DNA photolyase activity IEP Neighborhood
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0051258 protein polymerization IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 182 208
IPR002885 Pentatricopeptide_repeat 669 714
IPR002885 Pentatricopeptide_repeat 353 399
IPR002885 Pentatricopeptide_repeat 526 574
IPR002885 Pentatricopeptide_repeat 245 292
IPR002885 Pentatricopeptide_repeat 455 504
IPR002885 Pentatricopeptide_repeat 598 644
IPR002885 Pentatricopeptide_repeat 315 343
IPR002885 Pentatricopeptide_repeat 416 444
No external refs found!