LOC_Os12g24400.1

Description : transcription factor (FAR1)

Gene families : OG0014835 (Archaeplastida) Phylogenetic Tree(s): OG0014835_tree ,
OG_05_0014514 (LandPlants) Phylogenetic Tree(s): OG_05_0014514_tree ,
OG_06_0014408 (SeedPlants) Phylogenetic Tree(s): OG_06_0014408_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os12g24400.1
Cluster	HCCA: Cluster_156

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os07g45450.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os09g08460.1	No alias	transcription factor (FAR1)	0.14	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0015074	DNA integration	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004330	FAR1_DNA_bnd_dom	289	327
IPR007527	Znf_SWIM	551	580

External Links

No external refs found!