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  5. LOC_Os12g24540.1

LOC_Os12g24540.1


Description : no hits & (original description: none)


Gene families : OG0001085 (Archaeplastida) Phylogenetic Tree(s): OG0001085_tree ,
OG_05_0000943 (LandPlants) Phylogenetic Tree(s): OG_05_0000943_tree ,
OG_06_0004341 (SeedPlants) Phylogenetic Tree(s): OG_06_0004341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g24540.1
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00149p00102010 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT3G02890 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 Archaeplastida
AT5G16680 No alias RING/FYVE/PHD zinc finger superfamily protein 0.07 Archaeplastida
GSVIVT01024330001 No alias No description available 0.03 Archaeplastida
Gb_18601 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_40677 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_106351g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_175822g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp6g14570.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c5_28530V3.1 No alias RING/FYVE/PHD zinc finger superfamily protein 0.06 Archaeplastida
Pp3c6_1100V3.1 No alias RING/FYVE/PHD zinc finger superfamily protein 0.04 Archaeplastida
Smo439529 No alias No description available 0.03 Archaeplastida
Solyc04g070990.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e002445_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e029823_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 228 276
No external refs found!