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  5. LOC_Os12g28260.1

LOC_Os12g28260.1


Description : cyclic nucleotide-gated cation channel (CNGC)


Gene families : OG0000137 (Archaeplastida) Phylogenetic Tree(s): OG0000137_tree ,
OG_05_0000296 (LandPlants) Phylogenetic Tree(s): OG_05_0000296_tree ,
OG_06_0000523 (SeedPlants) Phylogenetic Tree(s): OG_06_0000523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g28260.1
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00177p00063110 evm_27.TU.AmTr_v1... Solute transport.channels.VIC superfamily.cyclic... 0.02 Archaeplastida
AT1G19780 ATCNGC8, CNGC8 cyclic nucleotide gated channel 8 0.08 Archaeplastida
AT2G24610 ATCNGC14, CNGC14 cyclic nucleotide-gated channel 14 0.03 Archaeplastida
AT3G17700 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-binding transporter 1 0.03 Archaeplastida
AT3G48010 ATCNGC16, CNGC16 cyclic nucleotide-gated channel 16 0.08 Archaeplastida
AT5G14870 CNGC18, ATCNGC18 cyclic nucleotide-gated channel 18 0.08 Archaeplastida
Cpa|evm.model.tig00021244.33 No alias Putative cyclic nucleotide-gated ion channel 9... 0.01 Archaeplastida
GSVIVT01015970001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.03 Archaeplastida
LOC_Os01g57370.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.04 Archaeplastida
Mp4g04110.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.02 Archaeplastida
Pp3c15_11518V3.1 No alias Cyclic nucleotide-regulated ion channel family protein 0.03 Archaeplastida
Pp3c3_20390V3.1 No alias cyclic nucleotide-binding transporter 1 0.03 Archaeplastida
Solyc02g086990.4.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.09 Archaeplastida
Solyc03g098210.4.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida
Solyc05g050380.4.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.02 Archaeplastida
Solyc06g051920.4.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida
Solyc07g005590.3.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.02 Archaeplastida
Zm00001e011591_P002 No alias cyclic nucleotide-gated cation channel (CNGC) 0.12 Archaeplastida
Zm00001e017971_P001 No alias cyclic nucleotide-gated cation channel (CNGC) 0.07 Archaeplastida
Zm00001e036286_P001 No alias cyclic nucleotide-gated cation channel (CNGC) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
MF GO:0036442 proton-exporting ATPase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 116 445
No external refs found!