1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g28460.1

LOC_Os12g28460.1


Description : AAA-ATPase At3g28580 OS=Arabidopsis thaliana (sp|q9ljj7|aatp9_arath : 337.0)


Gene families : OG0000095 (Archaeplastida) Phylogenetic Tree(s): OG0000095_tree ,
OG_05_0000059 (LandPlants) Phylogenetic Tree(s): OG_05_0000059_tree ,
OG_06_0014425 (SeedPlants) Phylogenetic Tree(s): OG_06_0014425_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g28460.1
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01010357001 No alias Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_11779 No alias AAA-ATPase At5g57480 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os01g45450.1 No alias AAA-ATPase At5g17740 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os12g24320.1 No alias AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10435468g0020 No alias AAA-ATPase At3g28510 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_216982g0010 No alias AAA-ATPase At2g46620 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc10g007280.4.1 No alias Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.02 Archaeplastida
Solyc12g055810.1.1 No alias AAA-ATPase At5g57480 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e007733_P001 No alias AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e033043_P001 No alias AAA-ATPase At3g28580 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e035111_P001 No alias Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
BP GO:0006534 cysteine metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009092 homoserine metabolic process IEP Neighborhood
BP GO:0019346 transsulfuration IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
BP GO:0050667 homocysteine metabolic process IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 156 284
IPR025753 AAA_N_dom 6 40
No external refs found!