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  5. LOC_Os12g29650.1

LOC_Os12g29650.1


Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana (sp|q9sd53|y3720_arath : 166.0)


Gene families : OG0000139 (Archaeplastida) Phylogenetic Tree(s): OG0000139_tree ,
OG_05_0000052 (LandPlants) Phylogenetic Tree(s): OG_05_0000052_tree ,
OG_06_0000062 (SeedPlants) Phylogenetic Tree(s): OG_06_0000062_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g29650.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00068760 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00016p00254860 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00023p00153750 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00023p00153970 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00023p00171820 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT2G44930 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
AT3G47200 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G47210 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
AT5G22550 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT5G22560 No alias Plant protein of unknown function (DUF247) 0.02 Archaeplastida
GSVIVT01001131001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.09 Archaeplastida
GSVIVT01033580001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.07 Archaeplastida
Gb_41270 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g37280.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os11g33430.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_109716g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 Archaeplastida
MA_120599g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc10g079530.2.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Solyc12g099300.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e011184_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023471_P002 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Zm00001e024232_P001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
InterPro domains Description Start Stop
IPR004158 DUF247_pln 44 440
No external refs found!