LOC_Os12g30540.1

Description : ubiquitin protease (USP7). deubiquitinase (UBP12-13)

Gene families : OG0000966 (Archaeplastida) Phylogenetic Tree(s): OG0000966_tree ,
OG_05_0001134 (LandPlants) Phylogenetic Tree(s): OG_05_0001134_tree ,
OG_06_0001034 (SeedPlants) Phylogenetic Tree(s): OG_06_0001034_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os12g30540.1
Cluster	HCCA: Cluster_72

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00140970	evm_27.TU.AmTr_v1...	Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana	0.07	Archaeplastida
AT3G11910	UBP13	ubiquitin-specific protease 13	0.02	Archaeplastida
AT5G06600	UBP12	ubiquitin-specific protease 12	0.09	Archaeplastida
Cpa\|evm.model.tig00000217.46	No alias	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana	0.01	Archaeplastida
Cpa\|evm.model.tig00000863.35	No alias	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cre07.g336200	No alias	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01022498001	No alias	Protein degradation.peptidase families.cysteine-type...	0.1	Archaeplastida
GSVIVT01034603001	No alias	Protein degradation.peptidase families.cysteine-type...	0.08	Archaeplastida
GSVIVT01037528001	No alias	Protein degradation.peptidase families.cysteine-type...	0.07	Archaeplastida
MA_10426331g0010	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	Archaeplastida
MA_10427483g0010	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.06	Archaeplastida
MA_10427483g0020	No alias	deubiquitinase (UBP12-13)	0.04	Archaeplastida
MA_10428769g0010	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	Archaeplastida
MA_75085g0010	No alias	deubiquitinase (UBP12-13)	0.05	Archaeplastida
Mp3g15430.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	Archaeplastida
Pp3c11_18780V3.1	No alias	ubiquitin-specific protease 12	0.05	Archaeplastida
Pp3c15_15710V3.1	No alias	ubiquitin-specific protease 12	0.03	Archaeplastida
Pp3c7_7420V3.1	No alias	ubiquitin-specific protease 12	0.02	Archaeplastida
Smo444302	No alias	Protein degradation.peptidase families.cysteine-type...	0.04	Archaeplastida
Solyc05g055090.4.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.06	Archaeplastida
Solyc10g081610.2.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.08	Archaeplastida
Solyc11g006320.2.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	Archaeplastida
Solyc11g071700.2.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.12	Archaeplastida
Zm00001e017788_P001	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.12	Archaeplastida
Zm00001e019687_P003	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.06	Archaeplastida
Zm00001e024432_P001	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.07	Archaeplastida
Zm00001e032871_P004	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.15	Archaeplastida
Zm00001e039540_P003	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein-specific protease activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	ubiquitinyl hydrolase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Neighborhood
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Neighborhood
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Neighborhood
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Neighborhood
MF	GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Neighborhood
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
MF	GO:0005543	phospholipid binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Neighborhood
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Neighborhood
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	Neighborhood
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Neighborhood
BP	GO:0006401	RNA catabolic process	IEP	Neighborhood
BP	GO:0006402	mRNA catabolic process	IEP	Neighborhood
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Neighborhood
CC	GO:0008023	transcription elongation factor complex	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Neighborhood
BP	GO:0010921	regulation of phosphatase activity	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
CC	GO:0016459	myosin complex	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
MF	GO:0019902	phosphatase binding	IEP	Neighborhood
MF	GO:0019903	protein phosphatase binding	IEP	Neighborhood
BP	GO:0022406	membrane docking	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Neighborhood
CC	GO:0030131	clathrin adaptor complex	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031399	regulation of protein modification process	IEP	Neighborhood
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
MF	GO:0035091	phosphatidylinositol binding	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
BP	GO:0035303	regulation of dephosphorylation	IEP	Neighborhood
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0036260	RNA capping	IEP	Neighborhood
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
MF	GO:0043015	gamma-tubulin binding	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044448	cell cortex part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0048278	vesicle docking	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050790	regulation of catalytic activity	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Neighborhood
BP	GO:0051246	regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0051336	regulation of hydrolase activity	IEP	Neighborhood
BP	GO:0051640	organelle localization	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0065009	regulation of molecular function	IEP	Neighborhood
MF	GO:0070568	guanylyltransferase activity	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
CC	GO:0099023	tethering complex	IEP	Neighborhood
BP	GO:0140029	exocytic process	IEP	Neighborhood
BP	GO:0140056	organelle localization by membrane tethering	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR029346	USP_C	894	1104
IPR024729	USP7_ICP0-binding_dom	632	884
IPR002083	MATH/TRAF_dom	69	189
IPR001394	Peptidase_C19_UCH	207	528

External Links

No external refs found!

LOC_Os12g30540.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation